one SNP, so several restriction enzymes were used. TA496 and Rio Grande were used as
references.
Table 2. SNP patterns for the 47 tomato accessions. (a) Pattern of TA496; (b) Pattern of Río
Grande.
SNP
Amplicon
size (bp)
Size of fragments
amplified after digestion
(bp)
Accessions
208 (b)
The rest of accessions
LEOH8
208
128, 80 (a)
Anastasia, Odisea, Royesta,
LA2853, LA1610
216 (a)
Evita, Anastasia, LA1610
LEOH9
216
156, 87 (b)
The rest of accessions
117, 87 (b)
Evita and LA1610
LEOH10
204
87, 60, 57 (a)
The rest of accessions
195 (a)
Odisea,
Zapotec,
Bond,
Vision, Ch89.
LEOH13
195
113, 82 (b)
The rest of accessions
200 (b)
The rest of accessions
LEOH15
200
135,65 (a)
LA2853, LA1610
120, 86 (a)
All the accessions
LEOH16a
206
87, 86, 33 (b)
---
146, 36, 24 (a)
--
LEOH16b
206
146, 30, 24, 6(b)
All the accessions
120,118,36,18,8 (a)
LA1610
LEOH17
300
118,69,51,36,18,8 (b)
The rest of accessions.
246 (a)
LA1610
LEOH20
246
137,109 (b)
The rest of accessions
192 (a)
The rest of accessions
LEOH
23a
192
131, 61 (b)
LA1610, Moneymaker
155 (b)
LA1610
LEOH
23b
155
127,28 (a)
The rest of accessions
500,80,60,60 (a)
Anastasia and Royesta
LEOH25a
700
500,140,60 (b)
The rest of accessions
700 (a)
Royesta, Zapotec
LEOH25b
700
610,90 (b)
The rest of accessions
700 (b)
The rest of accessions
LEOH25c
700
620,80 (a)
Anastasia, Royesta, Odisea,
Bond, Zapotec
174 (a)
--
LEOH 26
174
119, 55 (b)
All the accessions
355,225,220,180,150,120
(a)
Malpica (heterozygous)
LEOH29
1250
350,225,220,180,155,120
(b)
The rest of accessions
700, 670 (b)
The rest of accessions
LEOH35a
1370
670, 360,340 (a)
Anastasia, Bond, Royesta
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